Ronan M.T. Fleming
Ronan M.T. Fleming
testMgPipe.m: Error using initMgPipe (line 67) Unmatched parameter name '/home/rfleming/work/sbgCloud/code/fork-cobratoolbox/.tmp' must be a string scalar or character vector that can represent a field name. Error in testMgPipe (line 70) init...
Should model.rules only be generated on the fly within a function from model.grRules? It seems like people might get dependent on .rules, like they did with .rev as the former...
people often forget to install curl and then installation does not proceed correctly. better to remove it.
mvn install fails due to a missing dependency [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 2.039 s [INFO] Finished at: 2022-10-26T18:03:49+01:00 [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute...
The current implementation of stoichiometric consistency https://github.com/opencobra/memote/blob/master/src/memote/support/consistency.py#L66 provides a substantial under-estimate of the stoichiometric consistency when the heuristic check for internal reactions https://github.com/opencobra/memote/blob/master/src/memote/support/consistency.py#L93 misses some reactions that are actually external...
The way that submodules are handled needs to be improved. Calls like: git submodule foreach git checkout master git submodule foreach git pull git commit -am 'submodules point to master'...
Change function confDevTools(repoName, varargin) so that it returns some more useful output. % check if the remoteRepoURL exists before proceeding [status_curl, result_curl] = system(['curl -s -k --head ', tmpRemoteRepoURL]); if...
*Please include a short description of enhancement here* **I hereby confirm that I have:** - [ ] Tested my code on my own machine - [ ] Followed the guidelines...
Passing non-solver specific parameters to a solver gives an error. But this approach to split parameter structures [problemTypeParams, extraParams] = parseSolverParameters(problemType, varargin) and use extraParams for the solver needs to...
*Please include a short description of enhancement here* **I hereby confirm that I have:** - [ ] Tested my code on my own machine - [ ] Followed the guidelines...