Ronan M.T. Fleming
Ronan M.T. Fleming
Hi, that does not match the devel version https://github.com/opencobra/cobratoolbox/blob/develop/test/verifiedTests/analysis/testFVA/testFVA.m#L138 inputToTest = {{90, 'max', 'rxnNameList', rxnTest}; ... {90, 'osenseStr', 'max', 'rxnNameList', rxnTest, 'allowLoops', 1}; ... {'optPercentage', 90, 'rxnNameList', rxnTest}; ... {'opt',...
The code in this function is straightforward to read. e.g. it may exclude an objective reaction https://github.com/opencobra/cobratoolbox/blob/master/src/analysis/exploration/findExcRxns.m use findSExRxnInd or findStoichConsistentSubset The latter is the best option for detecting external...
Why are there multiple copies of almost the same file? e.g. findGenesAboveThreshold* Please replace binary files with csv, or move binary files to COBRA.binary/tests/IgemRNA otherwise people will complain it takes...
@almut-heinken can you reproduce this from the current code on the master branch?
Hi, have you checked your system is configured correctly before starting? https://opencobra.github.io/cobratoolbox/stable/installation.html Regards, Ronan On Wed, 30 Mar 2022 at 15:51, Xuejian Xiong ***@***.***> wrote: > Hi there, > >...
What is the response to: $ git --version $ curl --version On Wed, 30 Mar 2022 at 16:15, Xuejian Xiong ***@***.***> wrote: > > I installed git and curl. >...
Did you: 1. Change to the folder cobratoolbox/ and run from [image: matlab] >> initCobraToolbox On Thu, 31 Mar 2022 at 14:55, Xuejian Xiong ***@***.***> wrote: > for linux >...
Hi Thomas, Fig 10. in the attached shows the GPR for PFL. Has it been mis-specified? Regards, Ronan On Thu, 22 Nov 2018 at 09:28, Thomas Pfau wrote: > I...
contains is a function that needs a newer version of matlab On Mon, 11 Apr 2022 at 14:11, febedtu ***@***.***> wrote: > Hi, > > I have used older cobra...
Hi, feel free to contribute a PR with a workaround. Regards, Ronan On Tue, 19 Apr 2022 at 10:17, febedtu ***@***.***> wrote: > Is there support for Matlab2015b / a...