Ryan Ly

Delete MANIFEST.in and exclude artifacts from sdist and wheel

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Now that we use hatch to build instead of setuptools, and hatch has its own way of specifying which files go into the sdist/wheel, `MANIFEST.in` is no longer used and...

Allow reassigning and resetting AbstractContainer attributes/fields

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## Motivation Fix #411, fix #865 Major change to allow setting attributes on Container objects to new values, including None. If the attributes were read from a file (i.e. `container_source...

Use and apply black formatting

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## Motivation I added `black` to pre-commit so it will automatically modify the code to comply with black's uncompromising style guide. In this PR, I made some manual adjustments, particularly...

## Motivation Fix #794 - [ ] Add tests ## How to test the behavior? ``` Show how to reproduce the new behavior (can be a bug fix or a...

Modify dset/attr builders based on sidecar JSON

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## Motivation Fix #676. This is DEMO code to demonstrate how HDMF might support the reading of file modifications from a sidecar JSON. I made up the formatting/schema of the...

Fix improperly set new vs overridden attributes

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## Motivation Fix #447 . Fix bug in `BaseStorageSpec.resolve_spec` where attributes are not correctly removed from the set of new attributes. `__new_attributes` contains just the field names but `attribute` is...

Pass parent properties to extended dataset/attribute

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Fix #320 `'dtype'`, `'shape'`, `'dims'` are passed to extended dataset if not specified `'shape'` and `'dims'` are passed to extended attribute if not specified I also added TODOs in the...

Fix bug on gettype on empty array, add validator tests

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## Motivation Fix #317. Supersedes fix in #318. Closes #318. Adds a bunch of missing tests for validating the data type and shape of a dataset or attribute. Fix issue...

Add tests for #279. This is a work in progress.

[WIP] Add dimension scales/coordinates

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Add dimension scales/coordinates to support direct association of datasets with dimensions of other datasets within a group. See https://github.com/NeurodataWithoutBorders/pynwb/issues/626 Very much a work in progress. I am also taking the...