Reece Hart

I agree that API interoperability and data interoperability are different things, but I they're not completely distinct. For instance, in the case of HGVS, it would not be that hard...

On Tue, Apr 5, 2016 at 2:35 PM, gaberudy [email protected] wrote: > @reece https://github.com/reece Can the API reasonably be required to > validate strings for given fields? > > That's...

Same bug here. Here's the test code I generated to demonstrate (which recapitulates what others have already shown). ``` python #!/usr/bin/env python __doc__ = """test1 Usage: test1 (-C CONF...) [options]...

@newgene: My first recommendation would be not use (chr,pos,ref,alt) at all because it's under-specified. Instead, I presume (without looking at the code) that replacing chr with an accession would be...

UTA needs an update. The most recent version is uta_20180821. Although NM_007194.4 is in UTA, the 38 alignment for it is not. This typically means that it wasn't in the...

Additional comments: 1) UTA does contain the alignment of .3 to 38. So, if you know that that exon structures and alignments are consistent in this exon, you can probably...

Updating UTA is a pain right now, which is why it's languished (much to my chagrin). I wouldn't wish that process on anyone. (However, [instructions do exist](https://docs.google.com/document/d/1rzswpUSKIv-UjjbFyjtACBdtpBkzGToB9SzwLPWlt8g/edit) if you're feeling...

Note to self for future UTA update: I had hoped to use the gff3 files as-is for UTA cigar strings. This won't be possible because the gff3 files don't denote...

_Original comment on Bitbucket by_ **Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece))**: --- Pushing to 0.3.0 with other schema changes

_Original comment on Bitbucket by_ **Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece))**: --- ftp.ensembl.org doesn't provide GRCh37 fasta downloads. That means that the only source for sequences is from the API....