Reece Hart
Reece Hart
@jsstevenson @davmlaw: Comments please ↑
@jsstevenson This is ready for re-review.
Well, that's very surprising. I'll need to investigate. FWIW, UCSC appears to have fallen into the same issue:  (from https://genome.cse.ucsc.edu/cgi-bin/hgGene?hgg_gene=UC032ZJW.2, taken today)
Okay, found it. Not a bug. Ensembl itself returns this sequence: ``` ❯ curl -s -H "accept: application/json" 'https://rest.ensembl.org/sequence/id/ENST00000617537' | jq -r .seq | wc -c 211555 ``` (+1 char...
This issue is totally unrelated to SeqRepo. SeqFetcher is part of bioutils. I've just moved this issue from biocommons.seqrepo to bioutils. The underlying cause is that an ENST id refers...
I'm fine with you reopening it if you think it needs more discussion. The whole point of seqfetcher is to create a simple interface for fetching a sequence for a...
Yep we could assume cDNA. That's definitely the best solution.
I'm going to remove this from the hgvs 2.0 milestone. I agree that biocommons tools should make it easy to identify a MANE transcript, but I'm a bit skeptical that...
@andreasprlic I think this issue is related to #742 , right? I linked the PR to this issue.
From 8/26 maintainers' meeting: @andreasprlic: yes, please tag to exclude CI testing. Also, we decided to keep the similar function https://github.com/biocommons/hgvs/blob/main/src/hgvs/utils/context.py for now. If someone cares, we can combine functionality...