pgaudet
pgaudet
Group | Number of annotations -- dictyBase | 3 FlyBase | 2 MGI | 6 RGD | 37 UniProt | 31 WB | 1
The 2 parents should indeed be obsoleted: - [ ] GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity >> unnecessary grouping term no annotation - [ ] Obsolete GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity >> unnecessary...
Created a new ticket to avoid confusion https://github.com/geneontology/go-ontology/issues/30968
Annotation query for regulation terms: https://docs.google.com/spreadsheets/d/1fh_RlOa5l0ieXNFL7eTx2BBfyiYEQ3yPlqXSo4dlYRI/edit?gid=0#gid=0
Catabolic terms: = These should be merged down to the L-form: - [x] GO:0006524 alanine catabolic process -> GO:0042853 L-alanine catabolic process/GO:0055130 D-alanine catabolic process - [x] GO:0009093 'cysteine catabolic...
Hi @edwong57 ### GO:0006524 alanine catabolic process Has 7 direct annotations - I removed the 4 MTBASE annotations (biochemistry papers; no BP data). The other 3 papers talk about L-alanine....
~ 300 reactions have both parent and child in the ontology but the relation does not correspond (ie, they are not parent/child in GO)
@balhoff will link the PR when it's ready.
I agree, I made the same comment in https://github.com/geneontology/go-ontology/issues/20258#issuecomment-724511362
@cmungall Should we do this automatically? This one is 'special', in that I think it's a single reaction, as far as GO guidelines are concerned, that correspond to https://www.rhea-db.org/rhea/76491: (E)-ferulate ...