pgaudet
pgaudet
Hi @krchristie Is the information here sufficient for re-annotation? https://github.com/geneontology/go-ontology/issues/29475 We'll discuss this on an annotation in 2024, this is a big change.
@RLovering Let me know if that doesn't work for you, or if you'd rather move these to a different term. Thanks, Pascale
Thank you for looking into this! We'll get back to you shortly.
@RLovering please let us know if this ticket can be closed.
> Hi @vanaukenk can you let us know how complexes should be specified in the GPAD so we can check that we are doing it correctly? Is this helpful? https://geneontology.org/docs/gene-product-information-gpi-format/...
@ValWood You opened this because you could not find ComplexAc: CPX-566 Can you find it now? If you do, please close.
Duplicate of https://github.com/geneontology/noctua-visual-pathway-editor/issues/121
@ValWood @lreiser (and everyone) - I updated the spreadsheet (and the counts), to remove 'any MF annotation, and any regulation of binding, which we can do separately. Note that this...
For some reason (probably a download from QuickGO), all the annotations were from QuickGO. I replaced the annotations entities by MOD Ids for several groups. If I omitted a group...
There are 3 manual annotations, 1 by EcoCyc, 2 by Reactome, see https://docs.google.com/spreadsheets/d/11guPyj8KYHC8jGZQoMLoOIvDEsLsapoIH7SVPirIsXc/edit?gid=0#gid=0 - Ecoli orn is already annotated to [3'-5'-RNA exonuclease activity](https://www.ebi.ac.uk/QuickGO/term/GO:0000175)Source:EcoCyc1 publication and to [single-stranded DNA 3'-5' DNA...