pgaudet
pgaudet
@sjm41 I think GO:0010943 NADPH pyrophosphatase activity corresponds to RHEA:60820
Standardized term labels: - [x] GO:0004382 guanosine-diphosphatase activity -> GDP diphosphatase activity - [x] GO:0036384 cytidine-diphosphatase activity -> CDP diphosphatase activity - [x] GO:0043262 adenosine-diphosphatase activity -> ADP diphosphatase activity...
thanks @sjm41 The children of 'nucleoside diphosphate phosphatase activity' are now: '8-hydroxy-dADP phosphatase activity' '8-oxo-dADP phosphatase activity' '8-oxo-dGDP phosphatase activity' '8-oxo-GDP phosphatase activity' 'ADP phosphatase activity' 'CDP phosphatase activity' 'dIDP...
@sjm41 With respect to your comment above, https://github.com/geneontology/go-ontology/issues/23401#issuecomment-1143737394 - [x] thiamine-triphosphatase activity (GO:0050333) -> I think this be moved under a more specific term, 'nucleoside triphosphate phosphatase activity', and be...
- [x] need to look at the definition of GO:0017111; in GO the substrate is a nucleoside triphosphate , in RHEA (RHEA:23680) it's a ribonucleoside triphosphate - not consistent
- [x] XTP diphosphatase activity, moved from -is_a: GO:0017111 ! nucleoside triphosphate phosphatase activity to +is_a: GO:0047429 ! nucleoside triphosphate diphosphatase activity
As far as @sjm41 and I can tell, Thiamine is a pyrimidine but not a nucleoside - ie it doesn't have a sugar attached. So we'll move it from is_a...
- [x] thiamine phosphate phosphatase activity addxrefs: * RHEA:47948 | H2O + thiamine phosphate = phosphate + thiamine | * EC:3.1.3.100 Thiamine phosphate phosphatase
Fixed definition of pyrophophatase activity from: Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments. to: 'Catalysis of...
@ValWood Are you sure refolding is any different from folding? I meant to merge this - there is another ticket somewhere, from @RLovering I think. See also attached paper. [chaperones.pdf](https://github.com/geneontology/go-ontology/files/4856951/chaperones.pdf)