Peter Cock

Results 165 issues of Peter Cock

e.g. https://github.com/peterjc/biopython/blob/biopython-175/Doc/Tutorial/chapter_phenotype.tex Reduced to a smaller test case, note the inconsistent indentation of lines 4 and 6 (which LaTeX does not care about): ```latex \begin{description} \item[Well identifier] If you know...

It appears to be run in iPhone compatibility mode with a black border. Version is v1.0.0 as reported by App Store.

Android
iOS

The in-app about screen has a link here for reporting bugs, but does not tell you the current version of the app. That would be useful for bug reports. Version...

Android
iOS

I have been using the web-based 2048 game on iOS via a link so it looks like an application. This supports screen rotation (e.g. iPad in landscape), while v1.0.0 of...

iOS

We can use the Unix command line tools ``sort`` and ``uniq`` to remove duplicate rows in plain text table, but I find myself wanting to do something similar with duplicated...

The current conda environment naming can break Perl scripts within conda packages: ``` Global symbol "@_uv_" requires explicit package name (did you forget to declare "my @_uv_"?) ``` e.g. https://travis-ci.org/peterjc/kodoja_galaxy/jobs/339418927...

kind/bug
area/tool-dependencies

Would it make sense to support plain text ``requirements.txt`` files as used with ``conda install --file requirements.txt`` as an input to ``conda-lock``? It currently does not work, e.g.: ``` $...

Separately we will disable the https://pre-commit.ci/ integration with GitHub. As per discussion on #3958, this was redundant with the pre-commit tool checks already being run via GitHub Actions (and that...

Recently many pull requests and some of the checks on the main branch are failing at pre-commit.ci due to time outs, we appear to now slip over the 3m limit....

Testing
Style

Spin out from #855 which was specifically for ``test_NCBIXML.py`` but has the same root cause. Some of the test XML files contain a non-ASCII accented character: ``` $ grep $'\xc3\xbc'...

Bug
Testing