Peter Cock

Results 226 issues of Peter Cock

Example, call this ``test_bullets.py``, ```python """Silly mathematical example.""" import math def euclidean_distance(point_a, point_b): """Return the Euclidean distance between points A and B. Arguments: - point_a - point in space as...

Quoting https://github.com/Anaconda-Platform/anaconda-client/blob/master/requirements.txt anaconda-client requires anaconda-project>=0.9.1 However, anaconda-project is not on PyPI meaning this fails: ``` $ python -m pip install git+https://github.com/Anaconda-Server/anaconda-client Collecting git+https://github.com/Anaconda-Server/anaconda-client Cloning https://github.com/Anaconda-Server/anaconda-client to /private/var/folders/nz/vv4_9tw56nv9k3tkvyszvwg80000gn/T/pip-req-build-916gcv5p Running command git...

Fixes a regression in numpydoc v1.1.0 compared to v1.0.0 which did not have the ``_clean_text_signature`` function, manifested as: ``Handler for event 'autodoc-process-signature' threw an exception`` I don't have a minimal...

Proposed fix for #130, and tested on that example only. Query: Does the rename function never make the reference shorter? If not, my code can be simplified.

### Setup Mac OS X, Python 3.6, Sphinx 1.6.5, numpydoc 0.7.0 ``` $ python3 -msphinx --version Sphinx (sphinx-build) 1.6.5 $ python3 -c "import numpydoc; print(numpydoc.__version__)" 0.7.0 ``` ### Reproducible example...

type: Bug fix

As can be verified using http://archive.org to view old copies of the website, the wiki content was licensed under the "GNU Free Documentation License 1.2." http://www.gnu.org/licenses/old-licenses/fdl-1.2.html (since superceded by v1.3),...

Currently all the YAML header sections have the original wiki page name as their title, e.g. http://biopython.org/wiki/Seq https://github.com/biopython/biopython.github.io/blob/master/wiki/Seq.md ``` --- title: Seq permalink: wiki/Seq layout: wiki tags: - Wiki Documentation...

help wanted

We know about a few problem links e.g. #8 #13 #17, but should check this systematically. There are also some external links which no longer work. Ideally we'd have a...

help wanted

See #19 for fixing all the existing broken links. Once that's done, we should add a link checker to TravisCI to keep appraised of any broken links (due to external...

help wanted

The single largest group of broken links reported via the Google webmaster tools, and also noted by @mmokrejs (see http://mailman.open-bio.org/pipermail/biopython-dev/2016-April/021345.html) are URLs like this: http://www.biopython.org/pipermail/biopython/2011-January/006979.html This page is still available...