Peter Cock
Should silence some new setuptools deprecation warnings like: ``SetuptoolsDeprecationWarning: Installing 'Bio.Align.substitution_matrices.data' as data is deprecated, please list it in `packages`.`` See issue #4050 - [x] I hereby agree to dual...
Recent Windows CI builds are failing, circumstantial evidence suggests a build environment change in the last few days: 20 August 2022 - https://github.com/biopython/biopython/commit/1ebd1bb919a45908da4db46468a5180203377471 worked post PR https://github.com/biopython/biopython/pull/4045 merger 23 August...
Noticed on some recent CI builds, e.g Python 3.7 with setuptools-65.2.0 wheel-0.37.1 (which was failing for a different issue) https://github.com/biopython/biopython/runs/7970592569?check_suite_focus=true ``` C:\hostedtoolcache\windows\Python\3.7.9\x64\lib\site-packages\setuptools\command\build_py.py:202: SetuptoolsDeprecationWarning: Installing 'Bio.Align' as data is deprecated, please...
It is possible to have errors in Galaxy XML macro usage which functional tests will miss, particularly if the macro is only used in the human facing interface (tool help...
I would like ``planemo lint`` to report empty location files with a warning - they should at least have comments describing the format of the entries. This applies to both...
You have a nice clear license defined in your README file (MIT). However, on https://rubygems.org/gems/biomart the license is listed as N/A. As per http://guides.rubygems.org/specification-reference/#license= and http://spdx.org/licenses/ please update `biomart.gemspec` to...
Suggested patch to also profile the bitly Dablooms Python wrapper available from https://github.com/bitly/dablooms diff --git a/tests/comparisons/speedtest.py b/tests/comparisons/speedtest.py index 8d10a4c..428ebd1 100755 --- a/tests/comparisons/speedtest.py +++ b/tests/comparisons/speedtest.py @@ -9,7 +9,7 @@ import pybloomfilter...
Please add a `LICENSE` (or `LICENSE.md` or `LICENSE.txt`) file to the repository, ideally using an OSI https://opensource.org/ approved open source licence compatible with the wider R Bioinformatics community to maximise...
Please add a `LICENSE` (or `LICENSE.md` or `LICENSE.txt`) file to the repository, ideally using an OSI https://opensource.org/ approved open source licence compatible with the wider R Bioinformatics community to maximise...
See discussion on #34