Peter Cock
e.g. https://zenodo.org/record/4529396 ignored file https://github.com/peterjc/thapbi-pict/blob/v0.4.19/LICENSE.rst which is the standard MIT License, and which GitHub recognises. I note that https://docs.github.com/en/github/creating-cloning-and-archiving-repositories/licensing-a-repository currently only mentions files named ``LICENSE.txt`` or ``LICENSE.md`` so this oversight...
Browser & OS (see also https://www.whatismybrowser.com/): * Firefox 118 or Chrome 117 on macOS (Monterey) ## Describe the bug I was working on a new submission Thursday 12 October, and...
Consider the following use case which just happened to me: 1. Author creates a record with 100s of files 2. Author realises that this is unusable (issue #210, no easy...
# Reproducible example Example code based on https://biom-format.org/documentation/table_objects.html#examples ```python import numpy as np from biom.table import Table data = np.arange(40).reshape(10, 4) sample_ids = ["S%d" % i for i in range(4)]...
The README says BAMnostic is *a pure Python, OS-agnositic Binary Alignment Map (BAM) file parser and random access tool.* Are you intending to support BAM output, or is this only...
Cross reference #87, ``amptk_mock1.fa`` was earlier work and does not have species names. Pulling out the species names, ``` $ grep "^>" amptk_mock[2-3].fa | cut -f 2 -d ">" |...
As per https://chemapps.stolaf.edu/jmol/docs/#comments simplest comment syntax is leading # character
To be confirmed: Does Jupyter in %%bash mode with ``\`` line continuation pass thought tabs literally to the command line - rather than spaces? Seemed to be a problem for...
Biopython 1.71 is overdue for release, but will include the ``SeqRecord`` object's ``.translate`` method. With this we can revise the example from the ``03-lipases`` challenge work-through.
We seem to have two copies of this GenBank format file.