Nick Tustison
Nick Tustison
We do have point-set specific metrics in antsRegistration (ICP, PSE, and JHCT in the help menu). You can see an example of their usage [here](https://github.com/stnava/chicken). However, these are not available...
The number of threads will affect the cortical thickness processing which, depending on your computational capabilities, you might want to increase.
On my linux and mac systems, I have ``` tf.__version__ = '2.13.0' tfp.__version__ = '0.21.0' ```
[Here](https://github.com/ANTsX/ANTsPyNet/blob/master/antspynet/utilities/desikan_killiany_tourville_labeling.py#L62-L123) are the label names.
Multiple possible sources e.g., change in brain extraction weights, change in deep atropos weights, randomness due to the registration steps.
> 1.I obtained the cortical thickness in individual space; do I need to register it to template space using antsApplyTransforms for analysis? That's one way of doing it. But you'd...
Yes, all those commands are also available in ANTsR. Take a look at the tutorial I linked to above and scroll through some of the commands in ANTsR. If you...
You're not going to be able to use the ANTsRNet stuff as it was trained on human data.
[Here's](https://github.com/ntustison/ANTsXNetTraining/tree/main) where I store my training scripts. This is primarily for personal use at the moment but if people are interested, they are certainly welcome to view/use them.
I do that in several networks and the purpose is to simply ensure proper head orientation.