Nick Tustison comments

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                                            Nick Tustison

Installation error on Mac OS 12.6.3 with devtools

Thanks again @cookpa

colorbar key for antsrSurf

Yeah, agreed. Whenever I need to make custom color bars, I create my own using `convertScalarImageToRGB` but, correct me if I'm wrong, I don't think that functionality is available in...

colorbar key for antsrSurf

One easy solution off the top of my head: ``` colorbarImage

ANTsPy does not install (from source)

@cookpa --- Here's the code snippet in question from above: https://github.com/ANTsX/ANTs/blob/master/Tensor/TensorFunctions.h#L682C1-L691 That return type looks wrong. I don't know how we haven't seen this before.

ANTsPy does not install (from source)

> Perhaps its some systematic typecast error? I doubt it. This is at the level of ITK. I'm going to update the ITK tag in ANTs and the ANTs tag...

Are there 'better' parameters for using antsRegistration for EPI -> T2 on mice than the default?

How many slices for each image?

Are there 'better' parameters for using antsRegistration for EPI -> T2 on mice than the default?

My guess is that, yes, you're dealing with an outdated build. I run the following and don't have any issues: ``` $ antsRegistrationSyNQuick.sh -d 3 -f sub-LS101_ses-20221214T100203_roi-brain_T2w.nii -m sub-LS101_ses-20221214T100203_dir-fwd_proc-mean_roi-brain_bold.nii -n...

Are there 'better' parameters for using antsRegistration for EPI -> T2 on mice than the default?

Screenshots are sometimes adequate but, in this case, you're going to need to post a problematic data set.

Are there 'better' parameters for using antsRegistration for EPI -> T2 on mice than the default?

I ran the following: ``` $ antsRegistrationSyNQuick.sh -d 3 -f sub-LS102_ses-20221214T113013_roi-brain_T2w.nii -m sub-LS102_ses-20221214T113013_dir-fwd_proc-mean_roi-brain_bold.nii -n 4 -o test ``` and got something perfectly reasonable (attached as testWarped.nii.gz) considering the input images....