Nick Tustison

Thanks @cookpa. Yeah, they don't concern me as much. Importantly, we're aware of both of these and we can provide guidance to the user. Specifically, for the former, I think...

> Could I ask that which parameter in the function ants.build_template() in antspy corresponds to the-roption in buildtemplateparallel.sh I don't think it's available. But you can easily get something close...

No. FYI, you can find the parameters list from the help menu, ``help(ants.build_template)``. Also, the python version is a more limited version of what's available in the bash scripts so...

``dkt`` labeling requires a lot of memory. Without knowing anything further, my guess is that you're running into memory problems there. You can help confirm this by actually verifying that...

I have no problem running ADNI data on my machines. Perhaps your system is inadequate for running the DKT pipeline. I can try running a problematic image on my end...

I don't run it using a pool executor. I run it either in a for loop or send the image batch as individual jobs to the cluster.

I've run the DKT pipeline on thousands of images on my university's cluster in the way I described i.e., on the cluster with submitting each subject processing as a single...

Yeah, I'd opt for returning an ANTs image. But I'm fine either way.

This isn't descriptive enough to diagnose the problem. For example, we would also need to understand how you're assessing "optimal registration results" and to actually see the data and results...

I don’t have access to your data but I can provide some advice even before looking at the images. Given the large number of parameters to be optimized during image...