Nick Tustison

ANTs feature requests

7

This is an open issue soliciting possible feature requests for ANTs. I'll put together a corresponding wiki page where we can flush out some ideas further. Here are some current...

Error when combining warp fields defined on different domains in antsRegistration

2

I need to fix this. Just making a note in case anybody else runs into this issue. Doing something like ``` antsRegistration -d 3 -v 1 \ -o jlf000x001_Left_ \...

Hi all, Does anybody know if we have capabilities in ANTs to read RT struct files from dicom? I've used this [contribution](http://www.insight-journal.org/browse/publication/887) which seems to work and I was wondering...

Padding ---> Cropping: indices issue?

1

**Describe the bug** Cropping following padding throws an error: Requested region is (at least partially) outside the largest possible region. **To Reproduce** ``` import ants image = ants.image_read(ants.get_ants_data('r16')) padded_image =...

@stnava, @cookpa The most [recent commit](https://github.com/ANTsX/ANTsPyNet/commit/d3355b067d66634f5adff28c8161e3efabf74cc7) includes [inpainting](https://github.com/ANTsX/ANTsPyNet/blob/master/antspynet/utilities/inpainting.py#L4-L40) for t1 and flair whole head images. I think this is good for a first pass but there's probably room for improvement....

Template dependence on image spacing

5

Ran into a recent issue where a collaborator arbitrarily multiplied the image spacing by 1000 and generated a significantly different template---much better, in fact. Data were mice MRI with voxel...