Nick Tustison

For your inverse warped image, you forgot to specify the ``whichtoinvert`` parameter. Also, given your conversions to/from numpy arrays, we'd actually need a reproducible example (including data) to diagnose the...

GPU vs. no-GPU is a tensorflow distinction. This used to be a big headache when I would try to coordinate packages in ANTsRNet as it sits on a Python layer....

Good to know. Thanks.

Thanks. Yes, labels 5 and 6 are swapped between the description and the mask but that doesn't matter for the results. Everything that is visible to the user at the...

Actually, let me double check that on my other machine. The labels don't necessarily have to line up but I want to make sure that's actually what I did for...

Okay, so thanks for pointing this out. I had actually changed it during training and hadn't updated the mask on figshare. That should all be fixed now. Make sure you...

I'll have to verify to make sure but that'll probably need to change as well. But, ignoring this immediate potential labeling problem to be fixed, the specific labeling choices I...

No, sorry, I take that back.. The final label results should be correct, just not the input mask. You should be good to go once you update the repo and...

Yeah, if you take a look at the [preprint](https://www.biorxiv.org/content/10.1101/2024.05.01.592056v1) describing this work, I used two templates that I built from publicly available data sets (that I just happened to find...

Yeah, that makes sense---brain extraction is probably the most crucial step to ensure quality downstream processing. For the templates---can you just post a couple screenshots so I can see if...