Nick Tustison

And, fyi, I would always check with the self-contained, minimal tutorials for antsxnet available [here](https://gist.github.com/ntustison/12a656a5fc2f6f9c4494c88dc09c5621).

Hey @dbrennan44 . Ditto to what @cookpa said although I can see this being an output of the antspynet dkt call. I believe I mentioned it but we're revamping certain...

So we're reworking our brain extraction, deep atropos, and dkt pipelines. @cookpa is heading up a paper on all this. We don't have any other formal mechanism for advertising new...

The template looks fine to me. What sort of specific expectations are you not seeing in your results?

That functionality is not available but I don't see why it would be needed when one can concatenate transforms post-registration optimization. Please provide an example to clarify what is needed.

It's still not clear. Perhaps a diagram would help. The way I see it, you have two spaces A & B which you first align using SyN. Then, for your...

Have you seen the function ``label_image_registration(...)``? Example [here](https://gist.github.com/ntustison/12a656a5fc2f6f9c4494c88dc09c5621#label-image-registration).

Without the data, I can't confirm but it looks like a well-known boundary effect and the MNI template is particularly susceptible because it cuts off really close to the inferior...

Since you're just using a linear transform, why not use the anatomical image as the reference image to generate the affine transform, then resample the reference resolution to the desired...

Automatic determination of an "optimal" bounding box is a different problem than you what you wrote originally. It's certainly not a bug. But that's something that we don't in ANTs...