ngless

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As it stands, references can be pre-installed, but not modules.

luispedro

counts with many features/options should result in many files

1

Not clear exactly on the desired behaviour/API. But here is a proposal: counts = count(mapped, features=['A', 'B'], multiple=[{dist1}, {all1}]) write(counts, ofile='counts.{features}.{multiple}.txt') would result in 4 files: `counts.A.dist1.txt`, `counts.A.all1.txt`, `counts.B.dist1.txt`, `counts.B.all1.txt`.

luispedro

Support outputting count files in binary format

1

Instead of CSV/TSV format.

luispedro

Explicit way of invalidating locks

1

Sometimes when I'm testing things, jobs fail and leave active locks behind. Subsequent calls fail as they cannot obtain any lock. Currently I workaround this by removing the `ngless-locks` folder...

unode

Reading .bz2 files fails to decompress or segfaults

14

This was tested using the 1.0.0 conda build (is this one just the wrapped static build?) as well as with several different 'static' and containerized versions from 0.9 to 1.0.1....

unode