rnafusion
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nf-core
RNA-seq analysis pipeline for detection of gene-fusions
Version `2.5` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested, add...
### Description of the bug Hello, nf-core team It is more a how to question i was using nf-core for some fusion analysis like this, 1) creating conda env for...
### Description of feature I think it would be a good idea to add a new process in the pipeline with a trimming software because depending the samples the alignment...
Work in progress ## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that...
### Description of the bug not for 2.0.0 nor for 2.1.0 -- megatests not shown: https://nf-co.re/rnafusion/2.0.0/results#rnafusion/results-c47ce6fdbfbbb249b23613f4713dde27e9ca2853/ ### Command used and terminal output _No response_ ### Relevant files _No response_ ###...
Swap the containers for GET_META and GET_PATH to use the base ubuntu image already pulled for CAT_FASTQ, as they are already pulled by the pipeline. Helps those who struggle to...
### Description of the bug I run the rnafusion test analysis, and it gives the error: "No such file: /data/tmpnfs/nextflow_output/test_rnafusion/references/ensembl/Homo_sapiens.GRCh38.102.all.fa" The test analyses for sarek and rnaseq work ok. Should...
Version `2.6` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...