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Swap containers for GET_META and GET_PATH

Open SPPearce opened this issue 1 year ago • 2 comments

Swap the containers for GET_META and GET_PATH to use the base ubuntu image already pulled for CAT_FASTQ, as they are already pulled by the pipeline. Helps those who struggle to download containers on a cluster.

PR checklist

  • [X] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
    • [ ] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • [ ] If necessary, also make a PR on the nf-core/rnafusion branch on the nf-core/test-datasets repository.
  • [ ] Make sure your code lints (nf-core lint).
  • [ ] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • [ ] Usage Documentation in docs/usage.md is updated.
  • [ ] Output Documentation in docs/output.md is updated.
  • [X] CHANGELOG.md is updated.
  • [ ] README.md is updated (including new tool citations and authors/contributors).

SPPearce avatar Oct 19 '22 13:10 SPPearce

@SPPearce - can you add this to the changelog too?

apeltzer avatar Oct 19 '22 14:10 apeltzer

@nf-core-bot fix linting

apeltzer avatar Oct 20 '22 16:10 apeltzer

Closing this in favor of the more computationally efficient #282

rannick avatar Nov 09 '22 19:11 rannick