POC of new meta.yml structure and ontologies

[mirpedrol]

POC for https://github.com/nf-core/tools/pull/3028 and https://github.com/nf-core/tools/pull/3032

Run nf-core modules lint <module_name> --fix for modules:

• fastp
• samtools/sort
• samtools/index
• atlas/splitmerge
• pear
• multiqc
• bwa/mem

Note that linting won't pass until https://github.com/nf-core/modules/pull/5837 is merged

ℹ️ The bio.tools ID was not automatically found for bwa. ℹ️ The modules samtools/index, atlas/splitmerge and bwa/mem had wrong channels specified or missing inputs/outputs, thus the resulting modified meta.yml had to be fixed manually.

Ontology for input and output files were added for bwa/mem as an example.