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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
### Is your feature request related to a problem? Please describe For HPC systems where compute nodes do not have internet access (examples: [tars](https://github.com/nf-core/configs/blob/master/docs/pasteur.md), [UPPMAX](https://github.com/nf-core/configs/blob/master/docs/uppmax.md), [Atlas](https://www.hpc.msstate.edu/computing/atlas/)), modules that attempt to...
I think it would be good to have a module for [levioSAM2](https://github.com/milkschen/leviosam2) - [x] This module does not exist yet with the [`nf-core modules list`](https://github.com/nf-core/tools#list-modules) command - [x] There is...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
## PR checklist Closes https://github.com/nf-core/modules/issues/1854 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
## PR checklist Adds gatk's germline cnv caller modules (PreprocessIntervals, CollectReadCounts, AnnotateIntervals, FilterIntervals) and the respective test files - [x] This comment contains a description of changes (with reason). -...
## PR checklist Closes https://github.com/nf-core/modules/issues/1817 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
## PR checklist Closes https://github.com/nf-core/modules/issues/1815 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
