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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
When the input is a compressed Fasta file (i.e. with bgzip), `samtools faidx` also creates the `.gzi` file to enable random access into the fasta file. This PR registers an...
The umi_tools dedup command is not currently deterministic, even if `--random-seed` is set, unless the `PYTHONHASHSEED` environment variable is also set. Detailed in [https://github.com/CGATOxford/UMI-tools/issues/440](url) and [https://github.com/CGATOxford/UMI-tools/pull/470](url). Not fixed in the...
## PR checklist Added the module for endorspy Closes #855 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added...
I think it would be good to have a module for [KrakenUniq](https://github.com/fbreitwieser/krakenuniq) - [x] This module does not exist yet with the [`nf-core modules list`](https://github.com/nf-core/tools#list-modules) command - [x] There is...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
## PR checklist Closes #1886 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...