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Cannot reach https://busco-data.ezlab.org/v5/data/file_versions.tsv

15

### Description of the bug Hello, When I start nf-core-mag it runs for some time and then stops with ERROR: BUSCO analysis failed for some unknown reason! See also MEGAHIT-MetaBAT2-NG-30689_QN1_4_3_lib613328_10075_2.18.fa_busco.err....

ChristophKnapp

Version `2.5` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...

nf-core-bot

Consider adding checkM to the pipeline

1

### Description of feature CheckM is been updated to allow 'custom' paths to internal databases. We could now try adding it to the pipeline (Again)

jfy133

`NFCORE_MAG:MAG:PROKKA (MEGAHIT-group-14.13)` terminated with an error exit status (2)

6

Hi, I am using NFCORE MAG for the first time and unable to understand the error I ran through with prokka. I have attached the error log below. I appreciate...

anugos

update MultiQC report

3

This updates the MultiQC config - Only scans for tools that are used in the pipeline - Adds the nf-core/mag logo to the report - Reorders so bowtie2 output comes...

jfy133

GTDBTK module : WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.

23

Hello Everybody! I have some issues with this pipeline. It seems that my machine doesn't have enough memory to complete the workflow. May I could change the number of threads...

Philippemetagenomica

The results output directory structure is currently quite inconsistent (between different subdirs) and difficult to understand. ## Describe the solution you'd like It would be nice to clean this up...

skrakau

## Description of the bug When host read removal is turned on (with `host_fasta` or `--host_genome` ), the Bowtie2 section for the assembly mappings is missing in the `MultiQC` report....

skrakau

Pipeline fails due to error in "BUSCO_PLOT" process

6

Hi, I am running 'nextflow run nf-core/mag -profile singularity' with auto lineage selection. All runs well until the pipeline is killed at the NFCORE_MAG:MAG:BUSCO_QC:BUSCO_PLOT stage. It seems there are 2...

gleveq1

CAMI II results should be considered

1

## Is your feature request related to a problem? Please describe I am wondering how our current methods compare in the CAMI II challenge. We should make sure that we...

d4straub