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Published 20 hours ago • verified publisher icon nf-core

Bowtie2 sections broken in MultiQC

Open skrakau opened this issue 3 years ago • 0 comments
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Description of the bug

When host read removal is turned on (with host_fasta or --host_genome ), the Bowtie2 section for the assembly mappings is missing in the MultiQC report. This is due to the --ignore "*.bowtie2.log" parameter used in MULTIQC when host read removal is activated.

Steps to reproduce

nextflow run nf-core/mag -profile test_host_rm,<docker/singularity>

skrakau avatar Jun 01 '22 15:06 skrakau