Matthieu Muffato
Matthieu Muffato
`fasta_windows` is a tool to quickly compute statistics over a fasta file in windows. https://github.com/tolkit/fasta_windows ## PR checklist - [ ] This comment contains a description of changes (with reason)....
The container referenced in the current module has a broken `/etc/resolv.conf` that prevents the software from downloading anything. ``` Command executed: ncbi-genome-download \ -A GCF_000013425.1 --formats genbank,fasta,assembly-stats bacteria \ \...
Follow-up of #1921 and #1917; this time for `minimap2/index` This PR brings support for the meta map into `minimap2/index` ## PR checklist - [x] This comment contains a description of...
When the input is a compressed Fasta file (i.e. with bgzip), `samtools faidx` also creates the `.gzi` file to enable random access into the fasta file. This PR registers an...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
This will be used for testing software that require a bgzip-compressed file, e.g. `samtools`, c.f. https://github.com/nf-core/modules/pull/1935 (which is not happy with the existing gzip-compressed files)
#576 adds support for remote registries. Two assets are retrieved via https: - the git repository itself via `git clone` - a `library.json` file, that must be available on GitHub/GitLab...
#576 adds support for remote registries hosted at gitlab.com. GitLab can also be deployed on prem, i.e. at a different URL. For this to work, the code would have to:...
Hello, I am looking for a way of rebuilding all modules (or wrapper scripts, now). This could be used when a new release of `shpc` introduces changes to the way...
Hello, Got very interested in what @matthdsm did in #1798 . This is a small extension to support Slack as well, since Slack doesn't understand adaptive cards. Here is how...