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New module for fasta_windows

Open muffato opened this issue 2 years ago • 0 comments

fasta_windows is a tool to quickly compute statistics over a fasta file in windows. https://github.com/tolkit/fasta_windows

PR checklist

  • [ ] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [x] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ ] If necessary, include test data in your PR.
  • [x] Remove all TODO statements.
  • [x] Emit the versions.yml file.
  • [x] Follow the naming conventions.
  • [x] Follow the parameters requirements.
  • [x] Follow the input/output options guidelines.
  • [x] Add a resource label
  • [x] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • [x] PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • [x] PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • [x] PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

muffato avatar Aug 16 '22 14:08 muffato