mixcr issues

Can mixcr align Homo sapiens IGK JK-KDE gene?

1

We use multiplex PCR +gDNA to amplify human IGK with V and JK-KDE primers. After we assembled clones we almost got no clone reads. > IGK chains: 706756 (99.94%) but,...

suntaosimon

Rename nMutationsIn...Relative... to nMutationsIn...RelativeTo...

dbolotin

export

Rename "N. Inc. Seq." to "N. Imp. Seq." etc. in field extractors

Old "Inc." = "Incomplete" => "Imp." = "Imputed"

PoslavskySV

discussion_required

Start from BAM

PoslavskySV

TRB DJ rearrangements alignment

I apologize ahead of time if this is the incorrect place to post this question. I am trying to do DJ alignments for my library. I added these two entries...

ChandlerHo

Use smaller SequenceTreeMap nodes in Clustering

dbolotin

enhancement

Code style

https://confluence.jetbrains.com/display/IDEADEV/New+project+code+style+settings+format+in+2017.3

dbolotin

More specific docs for --no-merge flag in align

dbolotin

doc

Good examples and tests for mutation extraction for alignment attached gene features

`-nMutationsRelative VCDR3Part GermlineVCDR3Part` P segment behaviour ?

dbolotin

doc

export

UI

Rna-Seq parameters with v floating left bound = true

Important for: - single-cell RNA-Seq (parameters present) - make safer hit reordering in contig assembly safer

dbolotin

mixcr
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Can mixcr align Homo sapiens IGK JK-KDE gene?

Rename nMutationsIn...Relative... to nMutationsIn...RelativeTo...

Rename "N. Inc. Seq." to "N. Imp. Seq." etc. in field extractors

Start from BAM

TRB DJ rearrangements alignment

Use smaller SequenceTreeMap nodes in Clustering

Code style

More specific docs for --no-merge flag in align

Good examples and tests for mutation extraction for alignment attached gene features

Rna-Seq parameters with v floating left bound = true

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