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findAlleles get empty clone data

3

Hi ! I would like to run findAlleles to continue the analysis of SHM. However, when I run the findAlleles command with my own data which generated from analysis, no...

liu9756

The problem of mixcr exportPlots shmTrees

1

When I run commandline with "mixcr exportPlots shmTrees --metadata /home/EXP0033VH/metadata.tsv --node-color sample --line-color sample --node-label sample --alignment-aa CDR3 /home/EXP0033VH/findalle/findshmt/output.shmt /home/EXP0033VH/findalle/findshmt/tree_plot.pdf" I can't get the output results , with the wrong...

WZQ6

### Discussed in https://github.com/milaboratory/mixcr/discussions/1683 Originally posted by **yuyuleung** June 5, 2024 Hello, I wanna perform MiXCR analysis on my spatial TCR data, where multiple barcodes are assigned to a spatial...

yuyuleung

gnefedev

vBestIdentityPercent value NaN

6

Hi, I am using MIXCR for some SHM calculations. One of my samples shows a clone with vBestIdentityPercent value `NaN`. Wondering how this happened. Is the value expected or not?...

kwuiee

Postanalysis: preprocessing datasets progress unknown

4

Hi, While running `mixcr postanalysis`, I ran into an issue of "Preprocessing datasets: progress unknown". My `metadata.tsv` is formatted like this: ``` sample patient timepoint Patient-0004-T2-P-Library1-capTCR P0004_Library1 T2 Patient-0004-T2-P-Library2-capTCR P0004_Library2...

Januaryyiyue