Michał T. Lorenc
Michał T. Lorenc
Hi, Graphmap failed to build index: ``` .... [08:33:21 BuildIndexes] Loading reference sequences. [08:34:27 SetupIndex_] Building the index for shape: '11110111101111'. [08:34:48 Create] Allocated memory for a list of 4901727095...
Hi I followed the installation instructions how to to install graphmap, but I got ``` /usr/bin/ld: skipping incompatible /usr/lib/../lib/libpthread.so when searching for -lpthread /usr/bin/ld: skipping incompatible /usr/lib/../lib/libm.so when searching for...
Hi I followed the installation instructions how to to install graphmap, but I got ``` /usr/bin/ld: skipping incompatible /usr/lib/../lib/libpthread.so when searching for -lpthread /usr/bin/ld: skipping incompatible /usr/lib/../lib/libm.so when searching for...
Hi, How can I get [chords.js](https://github.com/nicgirault/circosJS/blob/master/demo/chords.js) labels orientation changed in the in the same way like in [text.js example](https://github.com/nicgirault/circosJS/blob/master/demo/text.js)? Thank you in advance Michal
Hi, I got the following 3 errors: ``` "test.js" 2L, 51C Error detected while processing /home/x/.vim/bundle/vim-nodejs -complete/after/ftplugin/javascript.vim: line 381: E716: Key not present in Dictionary: modules) . "' local nodes"...
Hi, Any plans to include biopieces to [Bioconda](https://github.com/bioconda/bioconda-recipes)? Thank you in advance. Michal
Hi, I like `agat_sp_complement_annotations.pl` and would it be awesome to be able to get 3 addition files with protein IDs in order to create a venn diagram? Thank you in...
Hi, I used minimap2 (2.17-r941). The `NbV1ChF.fasta` and `ragoo.fasta` are 2.8 G and 3.4 G. However, I ran out of memory on 2 TB machine. ``` minimap2 -ax asm5 --cs...
Hi, I have just run into `Error: Incomplete database file. Database building did not complete successfully`. I used the following file as protein evidence: [NbenthamianaGenbankAA.clean.fasta.gz](https://github.com/nextgenusfs/funannotate/files/7415125/NbenthamianaGenbankAA.clean.fasta.gz) ``` ./funannotate-docker predict -i NbLab330.genome.softmasked.fasta...
Hi, I do not plan to use GeneMark-ET but I want to use Augustus, GlimmerHMM and SNAP. 1. If I ran `funannotate train` do I still have to use `funannotate...