Michał T. Lorenc

Get gene sequence

2

Hi all, Apollo allows to drag-n-drop a gene into the yellow field, and from the gene menu, you can select *Get Sequence* and get, for example, the peptide sequence for...

Hi, Could you please add to the Search tab a function that shows and alignment and picture  Thank you in advance, Michal

Apollo Search tab to get a parameter box

1

Hi, The search tab looks awesome. Could you please add for example a parameter box to change the arguments for each search? Thank you in advance, Michal

Hi, Changing the order of the tracks via GUI.  Thank you in advance, Best wishes, Michal

Hi, It would be awesome to be still able to modify the JSON after the track was created via GUI, maybe an edit button next to the remove button. ...

Hi, Automatically creating an index e.g. via "perl "~/Apollo/jbrowse/bin/generate-names.pl --out /efs/apollo/LAB" after a new track has been uploaded via GUI to get:  Thank you in advance, Michal

Ref Sequence tab get stuck

1

Hi, Ref Sequence tab stopped showing information: **  ** What did I miss? Thank you in advance, Michal

Individual track permissions

5

Hi, Is there a way to make some tracks invisible to some users? Thank you in advance, Michal

Hi all, One of our organism in Apollo has started to show an empty annotation track. The only thing which appears in /var/log/tomcat7/localhost.*.log is: ``` Jun 01, 2021 2:00:44 AM...

Gradle update

10

Hi, IntelliJ IDEA Ultimate appears to be expensive. Netbeans, on the other hand, is free and seems to support Groovy/Grails/Gradle. However, I ran into two problems with Netbeans. The first...