Michał T. Lorenc

Hi, code completion with vim-iphyton ( https://github.com/ivanov/vim-ipython ) instead of rope works great.

Hi, There is a book called MongoDB for Python and the examples are available here ( http://examples.oreilly.com/0636920021513/mongodb-python-source-and-snippets.zip ). Could someone convert them to asyncmongo, please? Thank you in advance. Mic

Hi, Where could I rent a cluster in order to run FALCON? Thank you in advance, Best wishes, Michal

Error correction with Illumina

2

Hi, New tools have been published for error correcting PacBio reads with Illumina reads: - HALC (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1610-3 ) - FMLRC (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807796) I am just wondering which tool do you think...

fc_ovlp_filter adding support for las files rather only preads_lasfiles.fofn

2

Hi, Could you please add support to `fc_ovlp_filter` for las files rather only preads_lasfiles.fofn? At the moment I do it with the following bash script. ``` #!/bin/bash rm fc_ovlp_filter_cmds.txt for...

Hi, Could you please add an argument for DB rather use a hardcoded path? ``` fc_ovlp_stats --stream --n_core 4 --fofn preads_lasfiles.fofn --min_len 6973 > ovlp.stats [12684]u'LA4Falcon -mo ../1-preads_ovl/preads.db assemblyDB.129.las' raise...

reusing angular and node from containers

3

Hi, Is there a way that I could reuse node and angular from the containers in order develop the angular app? I found [here](https://www.youtube.com/watch?v=zcSbOl8DYXM) but I am not quite sure...

Hi, I followed the MCScanX [tutorial](https://github.com/wyp1125/MCScanx#family-tree-plotter-java) and got stuck at this command: java family_tree_plotter -t tree_file -s synteny_file -o output_PNG_file How to create a tree in Newick format? Thank you...

diamond as a replacement for BLAST

1

Hi, Do you have any plans to replace BLAST with [diamond](https://github.com/bbuchfink/diamond) which is an accelerated BLAST compatible local sequence aligner? Michal