Michał T. Lorenc

I'm new to JS and I am not able to do it.

@brianwawok: Could you share your own flyway like schema tool for cassandra?

Thank you, is Is possible to use the output from [Mikado](https://academic.oup.com/gigascience/article/7/8/giy093/5057872?login=true) as the `--stringtie` parameter? This tool apparently shows > `..that` the accuracy of transcript reconstruction can be boosted by...

[funannotate-p2g.log](https://github.com/nextgenusfs/funannotate/files/7417604/funannotate-p2g.log) [funannotate-predict.log](https://github.com/nextgenusfs/funannotate/files/7417605/funannotate-predict.log) Furthermore, I am running it also with no evidence. How much memory is required?

I rerun it with the original Genbank FASTA file without any cleaning of the header and the error has changed. [NbenthamianaGenbankAA.fasta.gz](https://github.com/nextgenusfs/funannotate/files/7420963/NbenthamianaGenbankAA.fasta.gz) Now I got ``` 0.016s]\nSearching alignments... [0.122s]\nProcessing query block...

Hi, we have a newer benth genome which is 2.8GB. If you think it would make any difference then I could send you a link to it. I ran it...

Hi, `--tmpdir .` has not helped. How can I login into the docker container and execute diamond?

Hi, After login inside the funannotate docker container and executing the diamond commands I got `Error: Error reading input stream at line 2: Invalid character (F) in sequence` I changed...

Hi, I am using diamond version 2.0.13 and according to https://github.com/nextgenusfs/funannotate/blob/fa4b1e201220f297d1d133e0dda6b175f9b18d95/funannotate/aux_scripts/funannotate-p2g.py#L92-L107 it should have used the frameshift mode but looking at the logs it looks like it did not use...

P.S. ``` >>> '2.0.13' >= '2.0.5' False ``` Therefore, it does not use frameshift mode. Maybe, it would be a good idea to run it always as frameshift mode.