Michał T. Lorenc
Michał T. Lorenc
Hi, Do you have any plans to add gene ontology to the GFF3 file? Michal
Hi, Maybe you could add `conda install dammit` which installs dammit from bioconda with only one command. Thank you in advance. Michal
Hi, Could you please `http://busco.ezlab.org/datasets/embryophyta_odb9.tar.gz` to `.databases.json`? Thank you in advance. Michal
Hi, I would like to try hickit with an allotetraploid denovo plant genome with HiC. It appears that HiC data has replicates because all my files looks this: ``` ls...
Hi, ``` $ haslr.py --contig megahit-final.contigs.fa --cov-lr 0 -t 8 -o results -g 2.7g -l N_sylvestris_UL.fastq -x nanopore checking /work/waterhouse_team/apps/haslr/bin/haslr_assemble: ok checking /work/waterhouse_team/apps/haslr/bin/minia_nooverlap: ok checking /work/waterhouse_team/apps/haslr/bin/fastutils: ok checking /work/waterhouse_team/apps/haslr/bin/minia: ok...
Hi, Could you please create a new release (https://github.com/bioconda/bioconda-recipes/pull/31228#pullrequestreview-794034514 )? Thank you in advance, Michal
Hi, ``` git clone https://github.com/vpc-ccg/haslr.git cd haslr make ``` ``` export PATH=/work/team/apps/haslr/bin/:$PATH checking /work/team/apps/haslr/bin/haslr_assemble: Traceback (most recent call last): File "/work/team/apps/haslr/bin/haslr.py", line 381, in main() File "/work/team/apps/haslr/bin/haslr.py", line 25, in...
Hi, What would be a good way to determine the kmer? Thank you in advance, Michal
Hi, Do you have any settings recommendation for tetraploid plant genome? Thank you in advance. Michal
Hi, I tried to use DBdust but I got in daligner step `daligner: Track 'dust' annotation file is junk` with the following commands (https://github.com/thegenemyers/DALIGNER/issues/73). By any chance do you know...