MAESTRO

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chromap — Illegal instruction (core dumped)

3

Ciao ! On a fresh MAESTRO — release 1.5.1 — installation (Ubuntu 18.04 with Python v3.8.12 installed) I tried to run `chromap`, `chromap --version` or `chromap -h` having immediately `Illegal...

kOoLiNuS

 I want to use this function to calculate the gene activity scores of human_mouse mixed datasets. Could this function do that? And is it recommended to use this tool...

yuxuanChen777

unrecognized arguments --frag How to fix it? Thanks

wxl123wxl

INFO @ Sat, 26 Feb 2022 11:52:20: #1 read fragment files... INFO @ Sat, 26 Feb 2022 11:52:20: #1 read treatment fragments... Traceback (most recent call last): File "/miniconda3/envs/MAESTRO/bin/macs2", line...

loraince

Chromap, Less than 5% barcodes can be found or corrected based on the barcode whitelist

1

Hi, I am using the MAESTRO to analyze a scATAC dataset downloaded form SRA database (accession number: SRR10399252), but I met this error: ``` Output file: Result/Mapping/SRR10399252_epilepsy/fragments_pre_corrected_dedup_count.tsv Loaded all sequences...

genecell

Hi team! I'm following your tutorial and trying to run `ATACAnnotateChromatinAccessibility()`, before that I have to download giggle index from Cistrome website, but the link `http://cistrome.org/~galib/giggle.all.tar.gz` does not exist anymore,...

Telogen

I am trying to run the pipeline on snRNA and snATAC data generated using the 10x multi-ome kit, the scRNA part completed successfully but the snATAC part exited with the...

itsyogeshd

question about Chromium Single Cell Multiome ATAC + Gene Expression

2

Hello, I have a general question. Does MAESTRO pipeline work for 10x Genomic Chromium Single Cell Multiome (snATAC + snRNA) data?

mabelwang21

Input seurat integration object

1

Hi, I am running Seurat pipeline similar to this: https://satijalab.org/seurat/archive/v3.0/immune_alignment.html Can I input the integrated seurat object as input to MAESTRO RNARunSeurat function?

mudappathir

supported species

10

Hi there, I noticed you mentioned in one of the previous question that a tutorial for non-human and non-mouse species could be provided. Is that tutorial available now? Thanks for...

pengxin2019