MAESTRO icon indicating copy to clipboard operation
MAESTRO copied to clipboard

Published 20 hours ago • verified publisher icon liulab-dfci

Input seurat integration object

Open mudappathir opened this issue 3 years ago • 1 comments

Hi,

I am running Seurat pipeline similar to this: https://satijalab.org/seurat/archive/v3.0/immune_alignment.html

Can I input the integrated seurat object as input to MAESTRO RNARunSeurat function?

mudappathir avatar Jun 01 '21 21:06 mudappathir

@mudappathir the input for this function is a matrix https://github.com/liulab-dfci/MAESTRO/blob/master/R/RNARunSeurat.R#L51 we use Seurat under the hood.

crazyhottommy avatar Aug 24 '21 19:08 crazyhottommy