Leandro Lima

Hello @dandaman , could you send it to leandro [at] ebi [dot] ac [dot] uk? I will debug the execution with your data and try to understand it. If the...

Hey @dandaman , yes, I did receive it and just replied! Sorry for the delay, I did not manage to access my mail during the day as I was focusing...

Hello @dandaman , Yes, but I was just able to take a quick look. I had to switch priorities to an urgent task from the last week, but will be...

Pandora has been extensively tested on E. coli, and some big plasmid databases, but IDK how much this second one would amount to... Very sorry for my lack of updates...

I've never used this command...

We are having issues with results on ONT data on the branch where we implemented GCP (https://github.com/leoisl/pandora/tree/GCP). ROC on ONT data shows that our precision and recall dropped significantly due...

Thanks for the description! I think the best for this case is to go into debug mode and understand why we have this drop of coverage. Cheers.

For this issue and https://github.com/rmcolq/pandora/issues/209 , before diving into debugging, I was wondering if we could get the expected results by changing some parameters. When using `--illumina` parameter, the error...

I think pandora as is now only works well on a specific read coverage setting. I'd downsample your targeted/amplicon sequencing to 300x for each region and run pandora. This is...

> One other thing that wasn't mentioned by either of you is point 1 in my comment (the global covg multiplier). I guess this is fixable with a CLI option,...