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rmcolq
Confusuing option in seq2path
There is an option --flag in seq2path subcommand which seems to have a conflicting behaviour. The previous comment/description for it was
"output success/fail rather than the node path"
But when I look at the code it seems to still output the node path... I've not used this subcommand before so I was wondering is someone who has used it can clarify this flag (@leoisl)?
Is it for checking whether a sequence really does lie entirely in the graph?
Not read the thread, but I think this was useful for development of mixture genotyping, not so useful for other people.
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-------- Original message -------- From: leoisl [email protected] Date: 21/09/2020 10:56 (GMT+00:00) To: rmcolq/pandora [email protected] Cc: Subscribed [email protected] Subject: Re: [rmcolq/pandora] Confusuing option in seq2path (#230)
I've never used this command...
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I'm not questioning the command itself, just the --flag option as it doesn't (seem to) do what it claims to do.