Leandro Lima

Yeah, we could also do what error correctors do when correcting a long read: split the long read into several shorter, well corrected regions if they don't manage to correct...

Yeah, that is indeed more flexible. From a user POV, I would prefer that this info would be given to me in a standard file format, where can be fed...

I guess what was raised before was the error rate. No impact in our current experiments I guess, as all samples input to pandora are downsampled to the exact same...

Alright, we can discuss it in details on Monday. While I do think this is important, we might have higher-priority tasks...

Got stuck on compiling GoogleTest using clang: https://github.com/leoisl/pandora/actions/runs/5465596735/jobs/9949262677 Switching to gcc-11

Hey, sorry for the delay. I will try to take a look at this next week. Thanks for the bug report with a MWE, helps a lot!

I am still off pandora, but will return to it soon

Is this still relevant @mbhall88 ?

Thanks for the bug description, it is complete, I don't think I need any more info. ## Retelling the story in other words This is just for a better understanding....

I don't think this is a `make_prg` issue. Will provide data backing this up. So I basically got this site, and put the PRG string, PRG GFA and the MSA...