Leandro Lima

Hello, I too got this problem and tried to solve as described. I created a fork (https://github.com/leoisl/gatb-core) since I did some other changes, but I did not manage to make...

Hello, wow, pretty nice and detailed benchmarking! I guess this should be addressed in the future, but for now it is important that your experiments aren't blocked and the slow...

hello, just restarting this discussion, since there is a new interesting related paper, and it is also nice to start looking around gramtools code & issues. I guess https://github.com/rob-p/BooM is...

> A pair perfect hash function linking two perfect hashes of the same data with different base hash functions might provide a way to get a set with membership queries...

> Also, definitely test out https://github.com/skarupke/flat_hash_map and https://github.com/greg7mdp/sparsepp. > > I'd love to hear about any other alternatives. In my application I am mostly limited by lookup speed, and can...

update: I had in mind that https://github.com/rob-p/BooM was not an associative index wrapper for BBHash, but it is... edited https://github.com/iqbal-lab-org/gramtools/issues/71#issuecomment-464014319 accordingly

Hello! Sorry for the delay on answering! It is nice to have the pairMPHF in mind, and a checksum from another MPHF could yield some interesting stuff, it can be...

I've already dealt with this in [DBGWAS](https://gitlab.com/leoisl/dbgwas). Precompilation was done using [Holy Build Box](http://phusion.github.io/holy-build-box/), so it should work on pretty much any glibc-based x86 and x86-64 Linux distribution released since...

just remembered gramtools also has python parts. Can also build a statically linked single binary for python code using [PyInstaller](https://github.com/pyinstaller/pyinstaller). This is what we do for the updateable make_prg: https://github.com/leoisl/make_prg/tree/master/scripts/build_precompiled_binary...

Dear @sanjaysrikakulam , I am really sorry for the huge delay on answering you (last weeks were unusual). We are interested in your PR, but could you make the PR...