Leandro Lima

Do agree, it looks like the the cost is low for implementing this, with high benefits. However, other tools (e.g. snippy, nanopolish, medaka) I think do not implement such normalisation...

- [ ] Port https://github.com/iqbal-lab-org/minos/blob/ed975d1099c6403eff79b04b0d2064eebfa95e73/minos/genotype_confidence_simulator.py to C++ in a branch

Oh sorry. Not sure I understood all that you said previously, but I have an answer below (we indeed need to discuss this in more details very soon, as I...

> * Write a python script that normalises pandora VCFs. The simulation of SNPs could be the same as the minos code, but the genotyping would be basically whatever pandora...

Yeah, you are right, we should design the full API before touching any line of code, I think I was just too eager to code already. Anyway, I think the...

This is needed for scalability, added label

Hello, sorry, I was on holidays and couldn't answer before. For point 2, I have nothing else to add besides what @iqbal-lab already said. For point 1, I can develop...

To do this, need to implement: * https://github.com/rmcolq/pandora/issues/306 * https://github.com/rmcolq/pandora/issues/305

No... I am actually removing the code to produce the stacktrace in this commit. We would not have a stacktrace in case of errors for pandora anymore. If we have...

Ok, so getting back to this, I might need some of your experience with `musl`: @mbhall88 , @jeff-k . A static binary linked against `musl` is the most portable one...