Luke Zappia

Hmmm... I'm guessing this is a problem with trying to convert something that doesn't have a matching Python type. Can you post the result of using `str()` on this object...

Thanks! I think it's probably the timestamps that are the issue. I'm going to reopen this as a reminder to add better checks to this part of the code.

Looking into this further the problem isn't anything to do with converting dates from R to Python, it's just that **h5py** can't really handle datetime objects. Despite this being a...

Ah, yes. I knew you suggested something like that but I couldn't remember what. Thanks for the reminder! Do you think 1.2MB is big enough to worry about or should...

One possible option is to use [`scanpy.get.rank_genes_groups_df()`](https://scanpy.readthedocs.io/en/stable/api/scanpy.get.rank_genes_groups_df.html) to convert it to a DataFrame which **{reticulate}** would convert. Downside is that this would require adding **scanpy** as a dependency. Interestingly the...

Hi @saulvegasauceda Thanks for giving **{zellkonverter}** a go. I think what you might be interrupting is the creation of the **{basilisk}** Python environment. What happens if you just let it...

I think you need to use `debug()` slightly differently. If you do: ```r debug(zellkonverter::readH5AD) zellkonverter::readH5AD(input_file, verbose = TRUE) ``` That should open the debugging browser. Then you can step through...

Hi @const-ae Thanks for the issue (and giving **zellkonverter** a go)! It definitely could be whatever is in `varm`, I should be able to download the dataset from the link...

Ok, I have spent some time looking into this. First I can confirm this is an issue (using the smaller `B_Plasma.h5ad` file from the same link). The culprit is indeed...

Ok, I've added checks that should prevent this error in the current dev version (v1.1.8) but without any conversion. I would like to be able to handle the conversion as...