Luke Zappia
Luke Zappia
Hi Possibly this is known behaviour but just thought I would report it in case it wasn't. When you try to colour edges using a numeric variable without loading **ggraph**...
I've just noticed that if you try and plot something without loading `ggraph` first the legends are missing: ```r data("highschool", package = "ggraph") hairball
In `sc.pp.highly_variable_genes()` when `flavor='cell_ranger'` and `n_top_genes` is set check that enough normalized dispersions have been calculated and if not raise a warning and set `n_top_genes` to the number of calculated...
In several Scanpy functions `sanitize_anndata()` is called which converts most string columns in `obs`/`var` to categorical columns. Often this seems to be a precaution rather than really necessary and as...
- [x] I have checked that this issue has not already been reported. - [x] I have confirmed this bug exists on the latest version of scanpy. - [ ]...
This is a list of suggested new categories to add to the database. If you have any other suggestions please comment below. Keep in mind that it is a significant...
It might be useful to have a list of benchmarking studies with links to the tools they contain. Links to benchmarks could also be added to the tool entries. A...