Justin Reese

Thanks @caufieldjh - specifically what we are looking for @LucaCappelletti94 @zommiommy is something like this: ``` g = Ensmallen.from_csv(**my_graph_params) my_embedddings = get_okapi_tfidf_weighted_textual_embedding(g) ``` If I understand correctly (which I might...

Okay, great - thanks @LucaCappelletti94 @caufieldjh can you have a look and see if this provides what we need in NEAT to switch to Grape for text embeddings? I think...

I'm having this problem too - when I try to transform rdf/xml to TSV [here](https://github.com/Knowledge-Graph-Hub/kg-covid-19/blob/d3614aa88bebc7c889d7a846155df4e66a80090f/kg_covid_19/transform_utils/gocam_transform/gocam_transform.py#L93): ``` t = Transformer(stream=False) t.transform(input_args=input_args, output_args=output_args) ``` the transform runs okay, but there is no...

> Alternatively, you could convert the RDF/XML to RDF NT which then can be supplied to KGX just like the other files. Thanks @deepakunni3 - that's just what I did,...

This would help with https://github.com/Knowledge-Graph-Hub/kg-covid-19/issues/328 Glad to help implement this

As @caufieldjh mentions above, we are running into this in kg-obo too, it's not a show-stopper though - lots or possibly all transformed OBO ontologies have nodes that are all...

Thanks Chris, a bit of context that might help the KGX dev team. [Here](https://kg-hub.berkeleybop.io/kg-obo/chebi/205/chebi_kgx_tsv.tar.gz) is an example of the CHEBI KGX TSVs that Chris is referring to, containing these sorts...

A note on this dataset: Birgit from IntAct says that they sync/exchange data regularly with Uniprot, so we might already have some of these data

thanks @matentzn just added you

Blocked (ish) by https://github.com/Knowledge-Graph-Hub/kg-covid-19/issues/235 We need to normalize protein IDs between STRING and IntAct in order to do this