Justin Reese
Justin Reese
@kshefchek send along the list of troublesome IDs when you get a chance, and I"ll figure out what Dipper ingests needs to be corrected here
Could/should we break this ticket into a few tickets? Seems like this might actually be a few separate items. I could start on improving the MGI ingest, then Clinvar ingest...
@kshefchek maybe could chat about this today-ish (or whenever) if you have time? Ping me if you get a minute today
About ingesting haploinsufficiency data, I pinged Harold Drabkin on Seth's advice, since he's an MGI informatics guy who might know where haploinsufficiency data lives in MGI (if it is in...
@TomConlin says that roqet is our friend: https://www.systutorials.com/docs/linux/man/1-roqet/
Also [behave](https://behave.readthedocs.io/en/latest/), per recommendation of @kltm
> Roughly how many edges are you expecting to receive? For this experiment (HP versus MP phenotypes), I think there are roughly 49k nodes and 93k edges so not particularly...
Good idea Tiffany - I did the conversion from Travis to GH actions to run unit tests and linters for KG-COVID-19 and NEAT, I might be able to help a...
I'm not terrible at github actions - maybe we can hack on this tomorrow @LucaCappelletti94 @pnrobinson
Possibly this is caused by a circular import? See [here](https://stackoverflow.com/questions/31593716/python-cannot-import-name-indexerror-list-index-out-of-range)