Justin Reese

Discussion with Bill - initial thought is to ingest the following for each case: `age` `sex` `location` `symptoms` `therapeutic/clinical intervention` `outcome` `covid genome sequence`

Per Marcin's sharp eyes, we could just ingest clinical data upstream, from where C3.ai ingests it: https://raw.githubusercontent.com/beoutbreakprepared/nCoV2019/master/latest_data/latestdata.csv Also here: https://docs.google.com/spreadsheets/d/e/2PACX-1vQU0SIALScXx8VXDX7yKNKWWPKE1YjFlWc6VTEVSN45CklWWf-uWmprQIyLtoPDA18tX9cFDr-aQ9S6/pubhtml

These two links seem to be the upstream source of some of C3.ai data - are they not working for you? https://raw.githubusercontent.com/beoutbreakprepared/nCoV2019/master/latest_data/latestdata.csv https://docs.google.com/spreadsheets/d/e/2PACX-1vQU0SIALScXx8VXDX7yKNKWWPKE1YjFlWc6VTEVSN45CklWWf-uWmprQIyLtoPDA18tX9cFDr-aQ9S6/pubhtml

thanks @namin

Thanks for spotting this @gregr - I'm going to break this out into a new ticket

This seems to come from CORD-19 and I think therefore has this license attached to it: https://www.cas.org/sites/default/files/documents/CAS-COVID19-Dataset-terms0420.pdf Thinking about how to ingest this, as a first pass we could use...

Per convo with Chris, probably better to do something like this: `CHEBI:12345 -> negatively regulates -> NCBI: 10239` #

I've pinged Anton Yuryev to see if these data are available in an easily ingestable format

Looks like these data are not at an accessible URL - I'm working with Anton on possibly getting them to put the data somewhere that is publicly accessible

With Elsevier's express permission, I've put the data [here](https://github.com/Knowledge-Graph-Hub/elsevier_covid_19_pathway_data/blob/master/COVID19dump.zip). RNEF xml documentation [here](https://github.com/Knowledge-Graph-Hub/elsevier_covid_19_pathway_data/blob/master/Elsevier%20RNEF-1.3%20for%20PS-9.0.pdf) DTD [here](https://github.com/Knowledge-Graph-Hub/elsevier_covid_19_pathway_data/blob/master/RNEF-1.3.dtd) From Anton Yuryev, about the zip file: "It has two parts: relations extracted for COVID19...