Justin Reese
Justin Reese
Just a note that we are going to table this item for now. We can revisit this later if we decide that we want/need a neo4j endpoint
> What about adding CHEBI? We actually ingest CHEBI now in KG-COVID-19 (see [here](https://github.com/Knowledge-Graph-Hub/kg-covid-19/blob/24393a430c968eabd6ca38cdef067204d740ad47/kg_covid_19/transform_utils/ontology/ontology_transform.py#L13)), although probably not as elaborately as what you describe for PheKnowLator > Also, I AM HUGE...
@pnrobinson discussed this ticket a bit with @realmarcin today, and we had some questions. possibly could discuss on on the n2v call (Thursday 12 pm your time), if you are...
> Why would this have to be shex? Couldnt we use shacl or any other tool in the pipeline? Sure, shacl or another tool is fine
Per [presentation by @cmungall ](https://docs.google.com/presentation/d/1IAHDniW_Kof0CApJBaIG-joxg7e2nQYwNQ61KEKI_xs/edit)at Monarch huddle today, we can improve normalization by doing clique merging with KGX + an SSSOM file
Looks like a valuable dataset. I think though we are missing a clear idea of what data exactly we want to ingest here, and what this buys us. Looks like...
@matentzn here's RDF (ntriples) for our TTD transform: [ttd.nt.gz](https://github.com/Knowledge-Graph-Hub/kg-covid-19/files/4920678/ttd.nt.gz)
@hrshdhgd per our convo today
Sounds like @realmarcin will implement this, and Bill can review his mapping/transform
Note that if this ingest requires an API call, this ticket will then probably also require a function in `download()` to call the API and emit a file