Justin Reese

Results 107 comments of Justin Reese

@wdduncan here's the ticket if you want to help here Basically we just want to change [this SPARQL query](https://github.com/Knowledge-Graph-Hub/kg-covid-19/blob/master/queries/sparql/query-05-sars-cov-2-interactors_druggable_2nd_order.yaml): ``` PREFIX xsd: prefix owl: prefix rdfs: prefix rdf: prefix bl:...

Yep, it's here: http://kg-hub-rdf.berkeleybop.io/blazegraph/#query

Thanks @wdduncan! ``` I don't get any results when I uncomment this part: # VALUES ?covtaxon {"2697049"^^xsd:string } # ?s1 ncbi_taxid: ?covtaxon . ``` I think what's going on here...

Thanks @wdduncan and @lpalbou! I made a few edits - see below - I think this is almost right - added taxon constraint to `?covp`: ``` VALUES ?covtaxon {"2697049"^^xsd:string }...

@kltm @cmungall @deepakunni3 could/should we make a neo4j somewhere (build.berkeleybop.io?) and try to load our TSVs using KGX? Probably will be slow and might fail at first, but worth a...

great thanks @deepakunni3 after discussion with @kltm, I think we need some input from @cmungall about what resources to use for this neo4j instance

sure, let's discuss at BBOP hangout if @cmungall is around, or else next time we're all in the same (zoom) room

#144 lets us point `load` at a neo4j instance and load data directly from kg-covid-19 as soon as @kltm sets up a neo4j instance at build-exp, we can add a...

pinging @kltm @cmungall to let you know we have this ticket for neo4j feature sounds like we want to have a look at what the current graph looks like in...

@kltm will wait for someone to ping him after we decide whether to move forward with this, and he will proceed with the devops, likely using EC2