Jared Simpson
Jared Simpson
Hi @s-t-calus, `call-methylation` requires a previously trained model, and defaults to detecting 5-mC in a CpG context in DNA. We also support two types of methylation in bacteria DNA (caused...
Hi, Sorry for the slow reply, I was on vacation. I don't think you'll be able to train a model with only one example RNA (if I understood you correctly)....
Hi, The path to the EIGEN source code moved a while ago, and it seems this branch doesn't have the fix. I'll try to fix this tomorrow. Jared On Tue,...
I fixed this in the commit above. Note that the r10 branch has fallen quite a bit behind master, but it should compile now.
Did you forget the `--recursive` flag during `git clone`?
Did you get any errors or output printed to the terminal/log files?
Hi, The `--model` command tells nanopolish to load the given model, but it will still try to detect the pore type from the fast5 files. If it cannot detect the...
Hi, This is implemented in the https://github.com/jts/nanopolish/tree/methylation_bam branch. Note that nanopolish uses an extension of the tag that I describe here: https://github.com/samtools/hts-specs/pull/592 so isn't exactly what is currently described in...
Closing as this now merged in
Hi @TimD1, This is an interesting one and I'm going to have to think about it a bit. I have to admit that the assertion doesn't make sense to me...